Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis | Science
single cell - How to find differential expressed genes within pseudotime trajectory with Seurat cluster? - Bioinformatics Stack Exchange
JCI Insight - Single-cell analysis of fate-mapped macrophages reveals heterogeneity, including stem-like properties, during atherosclerosis progression and regression
A guide to trajectory inference and RNA velocity | bioRxiv
Trajectory inference - Wikipedia
PhenoPath pseudotime analysis of single-cell RNA-sequencing data under... | Download Scientific Diagram
Trajectory-based differential expression analysis for single-cell sequencing data | Nature Communications
Uncovering pseudotemporal trajectories with covariates from single cell and bulk expression data | Nature Communications
PseudotimeDE: inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing data | bioRxiv
Single-cell RNA-Seq Trajectory Analysis Review - BioTuring's Blog
Pseudotime Estimation – Deconfounding Single Cell Time Series | RNA-Seq Blog
Pathologic evolution-related Gene Analysis based on both single-cell and bulk transcriptomics in Colorectal Cancer
Cellular Differentiation Using Trajectory Analysis & Single Cell RNA-Seq Data – Partek Inc
Chapter 10 Trajectory Analysis | Advanced Single-Cell Analysis with Bioconductor
Single-Cell Trajectory Analysis Using Monocle 2 and scGPS Pseudotime... | Download Scientific Diagram
Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut: Cell Systems
Trajectory-based differential expression analysis for single-cell sequencing data | Nature Communications
Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing - ScienceDirect
Tutorials — Scanpy 1.9.1 documentation
Pseudotime analysis in 5-plex time-course experiment. (A) Monocle... | Download Scientific Diagram
Global Dynamic Molecular Profiles of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing | bioRxiv
Generalized and scalable trajectory inference in single-cell omics data with VIA | Nature Communications
PseudotimeDE: inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing data | Genome Biology | Full Text
PseudotimeDE, statistical method that outperforms existing methods in its detection power | UCLA Computational Medicine
Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut: Cell Systems
